2018-05-04 17:02:332025-03-14 05:57:11
description
ABC transporter (ATP-binding protein), efflux of antibiotics (virginiamycin M, lincomycin)
F-type ATP-binding cassette protein, allosterically dissociates antibiotics (virginiamycin M, lincomycin) from their ribosomal binding sites
locus
BSU05610
BSU_05610
geneLength
1641
1644
function
efflux of antibiotics (virginiamycin M, lincomycin)
dissociation of antibiotics (virginiamycin M, lincomycin) from the ribosome
product
antibiotic efflux ABC transporter (ATP-binding protein)
ABCF ATPase
ec
outlinks
bsu
BSU05610
BSU_05610
Gene
Coordinates
604,736 → 606,379
604,736 606,379
The protein
Protein family
[SW|ABC transporter] family (according to Swiss-Prot)
[SW|ABC transporter superfamily] (according to UniProt)
[SW|ABCF ATPase subfamily] [pubmed|30597160]
Biological materials
Mutant
MGNA-C159 (expZ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2157 NBRP B. subtilis, Japan]
BKE05610 (Δ[[gene|vmlR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCATATCCCTCGCTTTA, downstream forward: _UP4_TGAGGGAGAAAGTTCAAGCG
BKK05610 (Δ[[gene|vmlR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCATATCCCTCGCTTTA, downstream forward: _UP4_TGAGGGAGAAAGTTCAAGCG
MGNA-C159 (expZ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2157 NBRP B. subtilis, Japan]
BKE05610 ([[gene|vmlR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCATATCCCTCGCTTTA, downstream forward: _UP4_TGAGGGAGAAAGTTCAAGCG
BKK05610 ([[gene|vmlR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCATATCCCTCGCTTTA, downstream forward: _UP4_TGAGGGAGAAAGTTCAAGCG
References
The protein
Paralogous protein(s)
[[this]]
The protein
[SW|Domains]
2 [SW|ABC transporter domain]s (aa 5-200, aa 292-504) (according to UniProt)
The protein
Structure
[PDB|6HA8] [pubmed|30126986]
The protein
[SW|Localization]
cytoplasm [pubmed|30597160]
References
Reviews
References
Original publications