SubtiBank SubtiBank
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2018-05-04 17:02:332025-03-14 05:57:11

description

ABC transporter (ATP-binding protein), efflux of antibiotics (virginiamycin M, lincomycin)

F-type ATP-binding cassette protein, allosterically dissociates antibiotics (virginiamycin M, lincomycin) from their ribosomal binding sites

locus

BSU05610

BSU_05610

geneLength

1641

1644

function

efflux of antibiotics (virginiamycin M, lincomycin)

dissociation of antibiotics (virginiamycin M, lincomycin) from the ribosome

product

antibiotic efflux ABC transporter (ATP-binding protein)

ABCF ATPase

ec

outlinks

bsu

BSU05610

BSU_05610

Gene

Coordinates

604,736 → 606,379

604,736 606,379

The protein

Protein family

[SW|ABC transporter] family (according to Swiss-Prot)

[SW|ABC transporter superfamily] (according to UniProt)

[SW|ABCF ATPase subfamily] [pubmed|30597160]

Biological materials

Mutant

MGNA-C159 (expZ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2157 NBRP B. subtilis, Japan]

BKE05610 (Δ[[gene|vmlR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCATATCCCTCGCTTTA, downstream forward: _UP4_TGAGGGAGAAAGTTCAAGCG

BKK05610 (Δ[[gene|vmlR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCATATCCCTCGCTTTA, downstream forward: _UP4_TGAGGGAGAAAGTTCAAGCG

MGNA-C159 (expZ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2157 NBRP B. subtilis, Japan]

BKE05610 ([[gene|vmlR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCATATCCCTCGCTTTA, downstream forward: _UP4_TGAGGGAGAAAGTTCAAGCG

BKK05610 ([[gene|vmlR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCATATCCCTCGCTTTA, downstream forward: _UP4_TGAGGGAGAAAGTTCAAGCG

References

10092453, 16109936, 20525796, 24687494, 27120414

The protein

Paralogous protein(s)

[[this]]

The protein

[SW|Domains]

2 [SW|ABC transporter domain]s (aa 5-200, aa 292-504) (according to UniProt)

The protein

Structure

[PDB|6HA8] [pubmed|30126986]

The protein

[SW|Localization]

cytoplasm [pubmed|30597160]

References

Reviews

30746819

References

Original publications

10092453, 16109936, 20525796, 24687494, 27120414, 24389466, 30126986, 30597160